nf-core Command Examples

The nf-core framework tools, to create, check and develop best-practice guidelines for Nextflow. More information: https://nf-co.re/docs/nf-core-tools.

• List existing pipelines on nf-core:

nf-core list

• Create a new pipeline skeleton:

nf-core create

• Lint the pipeline code:

nf-core lint {{path/to/directory}}

• Bump software versions in pipeline recipe:

nf-core bump-version {{path/to/directory}} {{new_version}}

• Launch an nf-core pipeline:

nf-core launch {{pipeline_name}}

• Download an nf-core pipeline for offline use:

nf-core download {{pipeline_name}}