snakefmt Command Examples

Format Snakemake files. More information: https://github.com/snakemake/snakefmt.

• Format a specific Snakefile:

snakefmt {{path/to/snakefile}}

• Format all Snakefiles recursively in a specific directory:

snakefmt {{path/to/directory}}

• Format a file using a specific configuration file:

snakefmt --config {{path/to/config.toml}} {{path/to/snakefile}}

• Format a file using a specific maximum line length:

snakefmt --line-length {{100}} {{path/to/snakefile}}

• Display the changes that would be performed without performing them (dry-run):

snakefmt --diff {{path/to/snakefile}}