nextflow Command Examples

Run computational pipelines. Mostly used for bioinformatics workflows. More information: https://www.nextflow.io.

nextflow run {{main.nf}} -resume

nextflow run {{user/repo}} -revision {{release_tag}}

nextflow run {{workflow}} -work-dir {{path/to/directory}} -with-report {{report.html}}

nextflow log

nextflow clean -force {{run_name}}

nextflow list

nextflow pull {{user/repo}} -hub bitbucket

nextflow self-update