blastp Command Examples

Protein-Protein BLAST. More information: https://www.ncbi.nlm.nih.gov/books/NBK279684/table/appendices.T.blastp_application_options/.

blastp -query {{query.fa}} -subject {{subject.fa}} -evalue {{1e-9}}

blastp -task blastp-fast -query {{query.fa}} -subject {{subject.fa}}

blastp -query {{query.fa}} -subject {{subject.fa}} -outfmt '{{6 qseqid qlen qstart qend sseqid slen sstart send bitscore evalue pident}}' -out {{output.tsv}}

blastp -query {{query.fa}} -db {{blast_database_name}} -num_threads {{16}} -max_target_seqs {{10}}

blastp -query {{query.fa}} -db {{nr}} -remote

blastp -h